Figure 5

Individual substitution rate of codons with their corresponding domain position.

Figure 5. Individual substitution rate of codons with their corresponding domain position. Corresponding protein sequence of codon alignment were used in INTERPRO scanner to find out their domains with positions. The labeling of the domains used in this figure is following :- (1) Bacterial flagellin N-terminal helical region[Flagellin_N (PF00669)] (2) Flagellin hook IN motif [Flagellin_IN (PF07196)] (3) Bacterial flagellin C-terminal helical region [Flagellin_C (PF00700)] (4) Flg_bb_rod (PF00460) (5) Flagellar basal body protein FlaE(PF07559) (6) Flagellar basal body rod FlgEFG protein C-terminal (7) FlgEFG_subfam(TIGR03506) (8) Flagellar hook protein flgE superfamily (9) flgK_ends( TIGR02492) (10) Flagellar basal body rod FlgEFG protein C-terminal [Flg_bbr_C (PF06429) ] (11) Phase 1 flagellin superfamily(SSF64518) (12) Surface presentation of antigens (SPOA) (13) PROKAR_LIPOPROTEIN (PS51257) (14) FlgH (PF02107) (15) Membrane MotB of proton-channel complex MotA/MotB [MotB_plug (PF13677)] (16) OmpA domain [OmpA (PF00691)] (17) Secretory protein of YscJ/FliF family[YscJ_FliF (PF01514)] (18) Flagellar M-ring protein C-terminal [YscJ_FliF_C (PF08345)] (19) FlgD Tudor-like domain(PF13861) (20) Flagellar hook capping protein – N-terminal region (PF03963) (21) FlgD Ig-like domain(PF13860)(20) Flagellar hook capping protein – N-terminal region (PF03963) (22) Cache domain [Cache_1 (PF02743)](23) HAMP (PF00672,PS50885,SM00304) (23) HAMP (PF00672, PS50885, SM00304) (24) Methyl-accepting chemotaxis protein (MCP) signalling domain [MCPsignal (PF00015)] (25) Vibrio chemotaxis protein N terminus [MCP_N (PF05581)] (26) Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer) [ MA (SM00283) ] (27) Flagella basal body rod protein superfamily (IPR006300).